classify.genes: Classify tree-associated genes

In hms-dbmi/crestree: Analysis of branching branching trajectories from single-cell data

Description

Tree-associated genes are classified in branch-monotonous, transiently expressed and having complex patterns.

Usage

classify.genes(r, n.cores = parallel::detectCores()/2, cutoff = 0.2)

Arguments

r	tree
cutoff	expression in local optimum should be higher/lower than both terminal branch values by cutoff.
X	expressinon matrix of genes (rows) vs cell (columns)

Value

vector of predicted classification for fitted genes.

hms-dbmi/crestree documentation built on July 11, 2019, 8:04 p.m.