kendomaniac/docker4seq
Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers

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kendomaniac/docker4seq: Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers
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API

API for kendomaniac/docker4seq
Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers

Global functions
CIRCexplorer2 Man page Source code
annoByGtfchipseq Man page Source code
anovaLike Man page Source code
bowtie2 Man page Source code
bowtie2Index Man page Source code
bwa Man page Source code
bwaIndex Man page Source code
bwaIndexUcsc Man page Source code
cdhit Man page Source code
chipseq Man page Source code
chipseqCounts Man page Source code
circrnaAnnotations Man page Source code
circrnaBSJunctions Man page Source code
circrnaClassification Man page Source code
circrnaMergePredictions Man page Source code
circrnaOverlapResults Man page Source code
circrnaPrepareFiles Man page Source code
circrnaQuantification Man page Source code
circrnaReformat Man page Source code
ciri2 Man page Source code
ciriAS Man page Source code
cutadapt Man page Source code
deeptoolBwig Man page Source code
demultiplexing Man page Source code
dockerTest Man page Source code
downloadContainers Man page Source code
experimentPower Man page Source code
fastq2fasta Man page Source code
fastqc Man page Source code
filterCounts Man page Source code
gatkDNA Man page Source code
getInfo Man page Source code
hashclone Man page Source code
heatmapBase Man page Source code
heatmaply Man page Source code
kraken Man page Source code
macs2 Man page Source code
mergeData Man page Source code
mirnaCounts Man page Source code
mirnaCovar Man page Source code
multiQC Man page Source code
oncosnp Man page Source code
oncosnpAnnotation Man page Source code
pca Man page Source code
platypus Man page Source code
platypusFilter Man page Source code
prepare4expands Man page Source code
pubmedNet Man page Source code
rnaseqCounts Man page Source code
rsemBw Man page Source code
rsemanno Man page Source code
rsemannoByGtf Man page Source code
rsemstar Man page Source code
rsemstarIndex Man page Source code
rsemstarUscsIndex Man page Source code
runDocker Man page Source code
salmonAnnotation Man page Source code
salmonCounts Man page Source code
salmonIndex Man page Source code
sample2experiment Man page Source code
sampleSize Man page Source code
skeleton Man page Source code
skewer Man page Source code
skewerXSergio Man page Source code
sncRNA Man page Source code
snvPreprocessing Man page Source code
sraDownload Man page Source code
star Man page Source code
star2steps Man page Source code
starChimeric Man page Source code
starChipIndex Man page Source code
starchipCircle Man page Source code
testSeqbox Man page Source code
trimFasta Man page Source code
wrapperCiri Man page Source code
wrapperDeseq2 Man page Source code
wrapperPdx Man page Source code
wrapperSTARChip Man page Source code
wrapperSalmon Man page Source code
xenome Man page Source code
xenomeIndex Man page Source code
kendomaniac/docker4seq documentation built on Sept. 3, 2024, 6:42 p.m.

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