filter_rl_network: Identifies all R / L interactions

In kgellatl/SignallingSingleCell: Network Analysis for single cell RNA sequencing Data (sc-RNASeq)

Description

This function will map all RL interactions

Usage

filter_rl_network(
  input,
  filter_by,
  filter_type = "network",
  DEfolder = NULL,
  cutoff,
  direction,
  absol = FALSE,
  group_by = FALSE,
  keep = FALSE
)

Arguments

input	the output of calc_rl_network
filter_by	the column to summarize by
filter_type	"network" or "DE"
DEfolder	the output location of findDEgenes
cutoff	value to filter by
direction	>, <, =
absol	whether or not to take the absolute value of the column
keep	if true will retain all edges and annotate them as passing the filter or not

Details

This will use the calc_agg_bulk results to ID networks

Examples

ex_sc_example <- id_rl(input = ex_sc_example)

kgellatl/SignallingSingleCell documentation built on Dec. 29, 2021, 4:12 p.m.