plot_gene_dots: Plot of genes by pData variable

In kgellatl/SignallingSingleCell: Network Analysis for single cell RNA sequencing Data (sc-RNASeq)

Description

This will plot information onto a 2d tsne plot

Usage

plot_gene_dots(input, genes, break_by, title = "", scale_by = FALSE, log = F)

Arguments

input	the input ex_sc.
genes	What to color points by, either "UMI_sum", or pData categorial variable, ignored if gene is provided
break_by	a pData variable to break the x axis by
title	The title
scale_by	Whether each gene should be scaled by break_by ("col") or gene ("row")

Details

Utilize information stored in pData to control the plot display.

Examples

plot_tsne_metadata(ex_sc_example, color_by = "UMI_sum", title = "UMI_sum across clusters", facet_by = "Cluster", ncol = 3)

kgellatl/SignallingSingleCell documentation built on Dec. 29, 2021, 4:12 p.m.