Files in kgellatl/SignallingSingleCell
Network Analysis for single cell RNA sequencing Data (sc-RNASeq)
.gitignore
DESCRIPTION
NAMESPACE
R/agg_gene.R
R/analyze_rl_network.R
R/build_rl_network.R
R/calc_agg_bulk.R
R/calc_genestats.R
R/calc_libsize.R
R/calc_rl_connections.R
R/cell_cor.R
R/cell_net.R
R/cluster_cell_net.R
R/cluster_sc.R
R/construct_ex_sc.R
R/construct_ex_sc_10x.R
R/detect_doublets.R
R/dim_reduce.R
R/edgeRDE.R
R/extract_communities.R
R/extract_nodes.R
R/filter_rl_network.R
R/findDEgenes.R
R/findDEmarkers.R
R/flow_filter.R
R/flow_svm.R
R/id_markers.R
R/id_rl.R
R/merge_ex_sc.R
R/norm_sc.R
R/plotViolin.R
R/plot_barplot.R
R/plot_density.R
R/plot_density_ridge.R
R/plot_dotplot.R
R/plot_gene_dots.R
R/plot_go_heatmap.R
R/plot_heatmap.R
R/plot_rl_summary.R
R/plot_scatter.R
R/plot_tsne_gene.R
R/plot_tsne_metadata.R
R/plot_violin.R
R/plot_volcano.R
R/pre_filter.R
R/reduce_cell_net.R
R/return_agg_gene.R
R/return_markers.R
R/return_subset_genes.R
R/save_ggplot.R
R/search_gene.R
R/subset_ex_sc.R
R/subset_genes.R
R/sysdata.rda
SignallingSingleCell.Rproj
man/agg_gene.Rd
man/analyze_rl_network.Rd
man/build_rl_network.Rd
man/calc_agg_bulk.Rd
man/calc_genestats.Rd
man/calc_libsize.Rd
man/calc_rl_connections.Rd
man/cell_cor.Rd
man/cell_net.Rd
man/cluster_cell_net.Rd
man/cluster_sc.Rd
man/construct_ex_sc.Rd
man/construct_ex_sc_10x.Rd
man/detect_doublets.Rd
man/dim_reduce.Rd
man/edgeRDE.Rd
man/extract_communities.Rd
man/extract_nodes.Rd
man/filter_rl_network.Rd
man/findDEgenes.Rd
man/findDEmarkers.Rd
man/flow_filter.Rd
man/flow_svm.Rd
man/id_markers.Rd
man/id_rl.Rd
man/merge_ex_sc.Rd
man/norm_sc.Rd
man/plotViolin.Rd
man/plot_barplot.Rd
man/plot_density.Rd
man/plot_density_ridge.Rd
man/plot_dotplot.Rd
man/plot_gene_dots.Rd
man/plot_go_heatmap.Rd
man/plot_heatmap.Rd
man/plot_rl_summary.Rd
man/plot_scatter.Rd
man/plot_tsne_gene.Rd
man/plot_tsne_metadata.Rd
man/plot_violin.Rd
man/plot_volcano.Rd
man/pre_filter.Rd
man/reduce_cell_net.Rd
man/return_agg_gene.Rd
man/return_markers.Rd
man/return_subset_genes.Rd
man/save_ggplot.Rd
man/search_gene.Rd
man/subset_ex_sc.Rd
man/subset_genes.Rd
vignettes/SignallingSingleCell_Thesis_Vignette.Rmd
vignettes/SignallingSingleCell_vignette.Rmd
vignettes/phs002455_vignette.Rmd
