return_markers: Return markers

In kgellatl/SignallingSingleCell: Network Analysis for single cell RNA sequencing Data (sc-RNASeq)

Description

This will return the marker genes.

Usage

return_markers(input, return_by = "Cluster", num_markers = 10)

Arguments

input	the input ex_sc
return_by	the pData column that was used for id_markers (id_by argument)
num_markers	the number of markers to return for each cell type

Details

This will return the marker and reference genes stored in fData(input) in a convienient list format.

Examples

marker_list <- return_markers(input = ex_sc, num_markers = 50)

kgellatl/SignallingSingleCell documentation built on Dec. 29, 2021, 4:12 p.m.