plot_density: Plot Density

In kgellatl/SignallingSingleCell: Network Analysis for single cell RNA sequencing Data (sc-RNASeq)

Description

This function will draw a distribution for a given value

Usage

plot_density(
  input,
  val,
  title = "",
  color_by = "NA",
  statistic = "mean",
  log = T,
  type = "density"
)

Arguments

input	the input ex_sc
val	Either "UMI_sum" or a gene name
title	The title of the plot
color_by	The metadata in pData that will be used to break the distributions into groups. Can be left blank.
statistic	Either the "mean" or "median" can be calculated

Details

This will draw a UMI distribution for a given value, broken into groups if color_by != "NA"

Examples

draw_density(input = ex_sc_example, val = "UMI_sum", color_by = "Cluster", statistic = "mean")

kgellatl/SignallingSingleCell documentation built on Dec. 29, 2021, 4:12 p.m.