plot_scatter: Create a Scatter Plot

In kgellatl/SignallingSingleCell: Network Analysis for single cell RNA sequencing Data (sc-RNASeq)

Description

This will plot information onto a 2d scatter (Gene 1 v Gene 2)

Usage

plot_scatter(
  input,
  gene1,
  title = "",
  gene2,
  color_by,
  facet_by = "NA",
  ncol = "NA",
  size = 2,
  colors = "NA",
  logscale = FALSE
)

Arguments

input	The input data
gene1	The first gene for scatter plot
title	The plot title
gene2	The second gene for scatter plot
color_by	What to color points by, either "UMI_sum" or pData categorial variable
facet_by	What to break the plots by
ncol	How many columns if faceting
size	The size of the points
colors	What colors to utilize for categorial data. Be sure it is of the proper length!

Details

Utilize information stored in pData to control the plot display.

Examples

plot_scatter(input = ex_sc_example, title = "Plot", gene1 = "Ccl22", gene2 = "Ccl5", color_by = "Cluster", facet_by = "Timepoint")

kgellatl/SignallingSingleCell documentation built on Dec. 29, 2021, 4:12 p.m.