plot_barplot: This will create a bar plot

In kgellatl/SignallingSingleCell: Network Analysis for single cell RNA sequencing Data (sc-RNASeq)

Description

This will plot a given gene via violin plot

Usage

plot_barplot(
  input,
  title = "",
  gene,
  color_by,
  facet_by = "NA",
  colors = NA,
  ncol = "NA",
  number_labels = T,
  text_sizes = c(20, 10, 5, 10, 5, 5),
  theme = "classic",
  alpha = 0.5
)

Arguments

input	The input data
title	The title
gene	if provided will color_by the gene
color_by	a pData variable
facet_by	a pData variable
colors	What colors to utilize for categorial data. Be sure it is of the proper length!
ncol	How many columns if faceting
text_sizes	a vector of title_size, axis_title, axis_text, legend_title, legend_text, facet_text, faults too c(20,10,5,10,5,5)
theme	the plot theme

Details

Utilize information stored in pData to control the plot display.

Examples

plot_violin(input, title = "Actb across clusters", gene = "Actb", color_by = "Timepoint", facet_by = "Cluster", size = 1, ncol = 3)

kgellatl/SignallingSingleCell documentation built on Dec. 29, 2021, 4:12 p.m.