createClassificationTree: Create Classification Tree
In khodosevichlab/CellAnnotatoR: Automated marker-based cell type annotation
createClassificationTree R Documentation
Create Classification Tree
Description
creates graph object for cell type hierarchy
Usage
createClassificationTree(marker.list)
Arguments
marker.list
list of markers per cell type. Can be obtained with 'parseMarkerFile'
Value
igraph graph with the type hierarhcy
Examples
markers <- parseMarkerFile(marker_path)
clf_tree <- createClassificationTree(markers)
khodosevichlab/CellAnnotatoR documentation built on June 29, 2022, 9:12 p.m.
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| createClassificationTree | R Documentation |
Create Classification Tree
Description
creates graph object for cell type hierarchy
Usage
createClassificationTree(marker.list)
Arguments
marker.list |
list of markers per cell type. Can be obtained with 'parseMarkerFile' |
Value
igraph graph with the type hierarhcy
Examples
markers <- parseMarkerFile(marker_path) clf_tree <- createClassificationTree(markers)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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