plotSubtypeMarkers | R Documentation |
plot markers for all subtypes of the specified 'parent.type'
plotSubtypeMarkers( embedding, count.matrix, parent.type = "root", clf.data = NULL, clf.tree = NULL, marker.list = NULL, show.legend = F, max.depth = NULL, build.panel = T, n.col = NULL, n.row = NULL, marker.type = c("expressed", "not_expressed"), title.size = 10, ... )
count.matrix |
gene expression matrix with genes by columns and cells by rows |
parent.type |
cell type for which the markers of the subtypes must be plotted |
marker.list |
list of markers per cell type. Can be obtained with 'parseMarkerFile' |
build.panel |
combine individual plots to a single panel |
n.col |
number of columns in the panel |
n.row |
number of rows in the panel |
title.size |
font size for title of individual plots. Used only if build.panel==T |
... |
Arguments passed on to |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.