plotMarkerListViolinMap: Plot expression violin map for given marker list

In khodosevichlab/CellAnnotatoR: Automated marker-based cell type annotation

Plot expression violin map for given marker list

Description

Plot expression violin map for given marker list

Usage

plotMarkerListViolinMap(
  count.matrix,
  annotation,
  parent.type = "root",
  clf.data = NULL,
  clf.tree = NULL,
  marker.list = NULL,
  max.depth = NULL,
  marker.type = "expressed",
  text.angle = 45,
  gene.order = NULL,
  ...
)

Arguments

count.matrix	gene expression matrix with genes by columns and cells by rows
parent.type	cell type for which the markers of the subtypes must be plotted
marker.list	list of markers per cell type. Can be obtained with 'parseMarkerFile'

khodosevichlab/CellAnnotatoR documentation built on June 29, 2022, 9:12 p.m.