getTopNegativeGenes: Get Top Negative Genes

In khodosevichlab/CellAnnotatoR: Automated marker-based cell type annotation

Get Top Negative Genes

Description

Get Top Negative Genes

Usage

getTopNegativeGenes(
  pos.gene,
  cell.type,
  cm.norm,
  annotation,
  cur.neg.genes,
  s.info,
  pos.score.changes,
  n.neg.genes,
  score.change.threshold
)

Arguments

pos.gene	positive marker for which new negative markers must be found
cell.type	all markers are relative to this cell type
cm.norm	tf-idf normalized count matrix
annotation	cell type annotation
cur.neg.genes	negative markers candidates
s.info	score info
pos.score.changes	score changes per cell from the positive marker candidates. Only 'pos.score.changes[,pos.gene]' is used
n.neg.genes	number of new negative markers to select
score.change.threshold	???

khodosevichlab/CellAnnotatoR documentation built on June 29, 2022, 9:12 p.m.