diffuseGraph: Diffuse Graph

View source: R/annotation.R

diffuseGraphR Documentation

Diffuse Graph

Description

Run diffusion on graph

Usage

diffuseGraph(
  graph,
  scores,
  fading = 10,
  fading.const = 0.5,
  score.fixing.threshold = 0.8,
  verbose = FALSE,
  max.iters = 1000,
  tol = 0.001
)

Arguments

graph

graph to diffuse on

scores

table of scores

fading

fading level for graph diffusion

fading.const

constant in exponent for graph diffusion

score.fixing.threshold

threshold for a label to be considered certain. Such labels can't be changed during diffusion.

verbose

print progress bar

tol

tolerance for diffusion stopping


khodosevichlab/CellAnnotatoR documentation built on June 29, 2022, 9:12 p.m.