diffuseGraph: Diffuse Graph

In khodosevichlab/CellAnnotatoR: Automated marker-based cell type annotation

Diffuse Graph

Description

Run diffusion on graph

Usage

diffuseGraph(
  graph,
  scores,
  fading = 10,
  fading.const = 0.5,
  score.fixing.threshold = 0.8,
  verbose = FALSE,
  max.iters = 1000,
  tol = 0.001
)

Arguments

graph	graph to diffuse on
scores	table of scores
fading	fading level for graph diffusion
fading.const	constant in exponent for graph diffusion
score.fixing.threshold	threshold for a label to be considered certain. Such labels can't be changed during diffusion.
verbose	print progress bar
tol	tolerance for diffusion stopping

khodosevichlab/CellAnnotatoR documentation built on June 29, 2022, 9:12 p.m.