getClassificationData | R Documentation |
prepare information neccessary for cell type classification
getClassificationData( cm, markers, prenormalized = F, data.gene.id.type = "SYMBOL", marker.gene.id.type = "SYMBOL", db = NULL, verbose = F )
cm |
gene count matrix with cells by columns and genes by rows. May be in raw, TC-normalized or tf-idf-normalized format (in case of tf-idf, 'prenormalized' must be set to 'T') |
markers |
path to the file with marker genes or parsed marker list from 'parseMarkerFile' function |
prenormalized |
is 'cm' in tf-idf-normalized format? Default: FALSE. |
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