mergeAnnotationByLevels: Merge Annotation By Levels

In khodosevichlab/CellAnnotatoR: Automated marker-based cell type annotation

Merge Annotation By Levels

Description

merge provided annotation using 'classification.tree' to get annotations for different levels of hierarchy

Usage

mergeAnnotationByLevels(annotation, classification.tree)

Arguments

annotation	annotation for high-resolution. Cell type names must correspond to nodes in the 'classification.tree'
classification.tree	cell type hierarchy represented by graph. Part of 'clf_data' object from 'getClassificationData'

Value

list of annotations where each element correspond to some hierarchy level

Examples

  ann_by_level <- mergeAnnotationByLevels(annotation, clf_data$classification.tree)

khodosevichlab/CellAnnotatoR documentation built on June 29, 2022, 9:12 p.m.