scoreCellUncertaintyPerLevel: Score Cell Uncertainty Per Level

In khodosevichlab/CellAnnotatoR: Automated marker-based cell type annotation

Score Cell Uncertainty Per Level

Description

Estimate uncertainty scores per annotation level

Usage

scoreCellUncertaintyPerLevel(ann.info.per.level, score.info, verbose = F, ...)

Arguments

ann.info.per.level	annotation info per level. Result of 'assignCellsByScores'.
score.info	list of marker scores per cell type. Can be obtained with 'getMarkerScoreInfo'
verbose	show progress bar for estimation
...	Arguments passed on to scorePerCellUncertainty cur.types subset of types used to measure uncertainty. Default: all values presented in annotation coverage.max.quantile all coverage values above this quantille are winsorized

Value

Uncertainty per level for each cell

Examples

  score_info <- getMarkerScoreInfo(clf_data)
  unc_info <- scoreCellUncertaintyPerLevel(ann_by_level, score_info)

khodosevichlab/CellAnnotatoR documentation built on June 29, 2022, 9:12 p.m.