getCellTypeScoreInfo: Get Cell Type Score Info

In khodosevichlab/CellAnnotatoR: Automated marker-based cell type annotation

Get Cell Type Score Info

Description

estimate info, neccessary for scoring of cells by cell types for the specified cell type

Usage

getCellTypeScoreInfo(markers, tf.idf, aggr = T)

Arguments

markers	element of marker list. List with fields 'expressed' and 'not_expressed'
tf.idf	TF-IDF normalized matrix. Can be obtained with 'normalizeTfIdfWithFeatures'
aggr	if scores must be aggregated for the whole cell type or returned for each marker separately

Value

list with score info:

• scores.raw: scores from positive markers

• mult: score multiplier, estimated with negative markers

• max.positive: maximal expression of positive markers. Used for estimation of negative scores

• scores: final scores. Equal to 'scores * score.mult'

khodosevichlab/CellAnnotatoR documentation built on June 29, 2022, 9:12 p.m.