getCellTypeScoreInfo | R Documentation |
estimate info, neccessary for scoring of cells by cell types for the specified cell type
getCellTypeScoreInfo(markers, tf.idf, aggr = T)
markers |
element of marker list. List with fields 'expressed' and 'not_expressed' |
tf.idf |
TF-IDF normalized matrix. Can be obtained with 'normalizeTfIdfWithFeatures' |
aggr |
if scores must be aggregated for the whole cell type or returned for each marker separately |
list with score info:
scores.raw: scores from positive markers
mult: score multiplier, estimated with negative markers
max.positive: maximal expression of positive markers. Used for estimation of negative scores
scores: final scores. Equal to 'scores * score.mult'
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