markerListToMarkup: Marker List to Markup

In khodosevichlab/CellAnnotatoR: Automated marker-based cell type annotation

Marker List to Markup

Description

Convert marker list to the markup language and optionally save it to a file

Usage

markerListToMarkup(marker.list, file = "", group.by.parent = T)

Arguments

marker.list	list of markers per cell type. Can be obtained with 'parseMarkerFile'
file	file to save to. If empty string, returns markup text instead of saving
group.by.parent	group cell types in the markup by the parent type

Value

path to the file if 'file == ""' or markupt text otherwise

Examples

markerListToMarkup(clf_data$marker.list, file="markers.txt")

khodosevichlab/CellAnnotatoR documentation built on June 29, 2022, 9:12 p.m.