selectMarkersPerType: Select Markers per Type

In khodosevichlab/CellAnnotatoR: Automated marker-based cell type annotation

Select Markers per Type

Description

Select Markers per Type

Usage

selectMarkersPerType(
  cm.norm,
  annotation,
  markers.per.type,
  marker.list = NULL,
  max.iters = nrow(cm.norm),
  parent = NULL,
  max.uncertainty = 0.25,
  verbose = 0,
  min.pos.markers = 1,
  max.pos.markers = 10,
  log.step = 1,
  n.cores = 1,
  refinement.period = 10,
  return.all = F
)

Arguments

cm.norm	tf-idf-normalized count matrix with cells by columns and genes by rows
markers.per.type	marker candidate per type
marker.list	list of already known markers per type, potentially empty

khodosevichlab/CellAnnotatoR documentation built on June 29, 2022, 9:12 p.m.