normalization.trimmed.mean: Trimmed mean normalization

In minzheguo/SINCERA: An R implementation of SINCERA pipeline for processing single-cell RNA-seq data.

Description

Trimmed mean normalization

Usage

normalization.trimmed.mean(x, up = 0.9, lo = 0.1, do.scaling = FALSE)

Arguments

x	The expression matrix; rows are genes, cells are columns
up	(numeric) upper quantile to be removed for calculation of the trimmed mean
lo	(numeric) lower quantile to be removed for calculation of the trimmed mean
do.scaling	(logical) scale the trimmed mean normalized expression values

Value

The normalized expression matrix

Note

This function is from SINCERA version a10242015. It will be upgraded soon.

minzheguo/SINCERA documentation built on Feb. 3, 2021, 2:31 p.m.