normalization.trimmed.mean: Trimmed mean normalization

Description Usage Arguments Value Note

View source: R/preprocessing.R

Description

Trimmed mean normalization

Usage

1
normalization.trimmed.mean(x, up = 0.9, lo = 0.1, do.scaling = FALSE)

Arguments

x

The expression matrix; rows are genes, cells are columns

up

(numeric) upper quantile to be removed for calculation of the trimmed mean

lo

(numeric) lower quantile to be removed for calculation of the trimmed mean

do.scaling

(logical) scale the trimmed mean normalized expression values

Value

The normalized expression matrix

Note

This function is from SINCERA version a10242015. It will be upgraded soon.


minzheguo/SINCERA documentation built on Feb. 3, 2021, 2:31 p.m.