plotHC: Plot the dendrogram tree of hierarchical clustering

In minzheguo/SINCERA: An R implementation of SINCERA pipeline for processing single-cell RNA-seq data.

Description

Plot the dendrogram tree of hierarchical clustering

Usage

plotHC(object, horiz = FALSE, show.labels = FALSE, do.radial = FALSE, ...)

Arguments

object	A sincera object with the hc.obj slot stored the dendrogram
horiz	If TRUE, plot the dendrogram tree with tips turned right
show.labels	If TRUE, show the labels of leafs
do.radial	IF TRUE, plot the dendrogram tree using radial layout

Details

When do.radial is FALSE, the plotting uses plot(); one can use pdf(), tiff(), or other similar functions to save plots to files when needed when do.radial is TRUE, the plotting uses ggplot2:ggplot(); one can use ggsave() to save plots to files.

minzheguo/SINCERA documentation built on Feb. 3, 2021, 2:31 p.m.