plotRDS: 2D plot of cells in the PCA or tSNE reduced dimensional...

In minzheguo/SINCERA: An R implementation of SINCERA pipeline for processing single-cell RNA-seq data.

Description

2D plot of cells using the PCA or tSNE components

Usage

plotRDS(object, feature.type = "pca", dim1 = 1, dim2 = 2,
  color.by = "GROUP", pt.size = 5, do.label = F, label.size = 10, ...)

Arguments

object	A sincera object
feature.type	The type of components, possible values include pca, tsne
dim1	The component for x axis
dim2	The component for y axis
color.by	The cell metadata used to color cells
pt.size	The size of points (cells) in the plot
do.label	If TRUE, show group label in the plot
label.size	The size of the group label

minzheguo/SINCERA documentation built on Feb. 3, 2021, 2:31 p.m.