prefilterGenes: Pre-filtering genes with low abundancy

In minzheguo/SINCERA: An R implementation of SINCERA pipeline for processing single-cell RNA-seq data.

Description

Pre-filtering genes with low abundancy

Usage

prefilterGenes(object, pergroup = TRUE, min.expression = 5, min.cells = 2,
  min.samples = 1, ...)

Arguments

object	A sincera object
pergroup	If TRUE, the prefiltering will be based on genes' per sample abundancy; otherwise, it will be based on genes' abundancy in all cells
min.expression	The threshold value of gene expression
min.cells	The minimum number of cells
min.samples	The selected genes must pass the abundancy criteria in at least \"min.samples\" samples

Value

An update sincera object with prefiltered genes removed

minzheguo/SINCERA documentation built on Feb. 3, 2021, 2:31 p.m.