sigpred.testing.sets: Constructing group specific testing sets for signature...

In minzheguo/SINCERA: An R implementation of SINCERA pipeline for processing single-cell RNA-seq data.

Description

Constructing group specific testing sets for signature prediction

Usage

sigpred.testing.sets(ES, group.by = CLUSTER.LABEL, groups = NULL,
  testset.prefix = TESTSET.PREFIX, diff.expr.prefix = DIFF.EXPR.PREFIX,
  diff.expr.threshold = 0.05)

Arguments

ES	(ExpressionSet) an ExpressionSet object containing the single cell RNA-seq data
group.by	(character) the name of the column that contains the cluster information
groups	(character) the clusters for signature prediction
testset.prefix	(character) prefix for labeling the columns encoding the testing instances for each group
diff.expr.prefix	(character) prefix for labeling the columns encoding the results of differential test
diff.expr.threshold	(numeric) genes with differential expression p-value<0.05 will be selected as candidates for signature

Value

an ExpressionSet object containing the constructed testing sets in the attributes of fData

minzheguo/SINCERA documentation built on Feb. 3, 2021, 2:31 p.m.