sigpred.training.sets: Constructing group specific training sets for signature...

Description Usage Arguments Value

View source: R/signature.R

Description

Constructing group specific training sets for signature prediction

Usage

1
2
3
4
5
6
sigpred.training.sets(ES, group.by = CLUSTER.LABEL, groups = NULL,
  trainset.prefix = TRAINSET.PREFIX,
  train.class.prefix = TRAIN.CLASS.PREFIX,
  test.statistic.metric.prefix = TEST.STATS.METRIC.PREFIX,
  common.prefix = COMMON.PREFIX, unique.prefix = UNIQUE.PREFIX,
  syn.sim.prefix = SYN.SIM.PREFIX, marker.prefix = MARKER.PREFIX)

Arguments

ES

(ExpressionSet) an ExpressionSet object containing the single cell RNA-seq data

group.by

(character) the name of the column that contains the cluster information

groups

(character) the clusters for signature prediction

trainset.prefix

(character) prefix for labeling the columns encoding the training instances for each group

train.class.prefix

(character) prefix for labeling the columns encoding the class of group specific training instances

test.statistic.metric.prefix

(character) prefix for labeling the columns encoding the results of test statistic metric for each group

common.prefix

(character) prefix for labeling the columns encoding the results of common metric for each group

unique.prefix

(character) prefix for labeling the columns encoding the results of unique metric for each group

syn.sim.prefix

(character) prefix for labeling the columns encoding the results of synthetic profile similarity metric for each group

marker.prefix

(character) prefix for labeling the columns encoding the biomarkers for each group

Value

an ExpressionSet object containing the constructed training sets in the attributes of fData


minzheguo/SINCERA documentation built on Feb. 3, 2021, 2:31 p.m.