buildFrequencyTables: Return all analytes that map to unique pathways in a...

View source: R/rampQueryHelper.R

buildFrequencyTablesR Documentation

Return all analytes that map to unique pathways in a pathwaydf

Description

Return all analytes that map to unique pathways in a pathwaydf

Usage

buildFrequencyTables(inputdf, pathway_definitions, analyte_type)

Arguments

inputdf

internal df with pathwayramp ids

pathway_definitions

If "RaMP" (default), use pathway definitions within RaMP-DB. Else, supply path to gmx file containing custom pathway definitions. GMX files are a tab-separated format that contain one analyte set per column, with the name of the set in the first row, and constituent analytes in subsequent rows

analyte_type

"genes" or "metabolites"

Value

dataframe of all analytes that map to the input pathways

Author(s)

Andrew Christopher Patt


ncats/RaMP-DB documentation built on Sept. 26, 2022, 4:37 a.m.