buildFrequencyTables: Return all analytes that map to unique pathways in a...

In ncats/RaMP-DB: RaMP (Relational Database of Metabolomic Pathways)

Return all analytes that map to unique pathways in a pathwaydf

Description

Return all analytes that map to unique pathways in a pathwaydf

Usage

buildFrequencyTables(db = RaMP(), inputdf, pathway_definitions, analyte_type)

Arguments

inputdf	internal df with pathwayramp ids
pathway_definitions	If "RaMP" (default), use pathway definitions within RaMP-DB. Else, supply path to gmx file containing custom pathway definitions. GMX files are a tab-separated format that contain one analyte set per column, with the name of the set in the first row, and constituent analytes in subsequent rows
analyte_type	"genes" or "metabolites"

Value

dataframe of all analytes that map to the input pathways

Author(s)

Andrew Christopher Patt

ncats/RaMP-DB documentation built on June 1, 2024, 9:34 p.m.