getRaMPInfoFromAnalytes: Internal function for extracting annotations, used by pathway...

In ncats/RaMP-DB: RaMP (Relational Database of Metabolomic Pathways)

Internal function for extracting annotations, used by pathway and chemical enrichment test functions

Description

Internal function for extracting annotations, used by pathway and chemical enrichment test functions

Usage

getRaMPInfoFromAnalytes(
  db = RaMP(),
  analytes,
  NameOrIds = "ids",
  PathOrChem = "path"
)

Arguments

analytes	a vector of analytes (genes or metabolites) that need to be searched
NameOrIds	whether input is "names" or "ids" (default is "ids")
PathOrChem	return "path" information for pathways or "chem" for chemical class

Value

a list of rampIds for "path" or a dataframe of chemClass info

ncats/RaMP-DB documentation built on June 1, 2024, 9:34 p.m.