findAnalyteHasPathway: Find table of analyte has pathway from given pathway IDs...

Description Usage Arguments Value

View source: R/processNewRamp.R

Description

Find table of analyte has pathway from given pathway IDs Aggregate ramp Id to ramp pathway Id GC is C or G

Usage

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findAnalyteHasPathway(pathwayRampId, GC = "C", n = 10,
  username = "root", dbname = "ramp", conpass, host = "localhost")

Arguments

pathwayRampId

a vector of ramp Pathway ID

GC

the analytes type that is either "C" for compound or "G" for gene

n

minimum analytes of which pathway to considered computing overlap

username

a string that specifies name of MySQL database

dbname

a string that specifies database name of MySQL database

conpass

a string that specifies password for database connection

host

a string that specifes host for database connection

Value

A list with pathway rampID as name, a vector of analytes from this pathway as content.


ncats/RaMP-DB documentation built on Nov. 21, 2020, 7:41 p.m.