getReactionsForSourceProteinIds: getReactionsForSourceProteinIds returns reactions for a...

In ncats/RaMP-DB: RaMP (Relational Database of Metabolomic Pathways)

getReactionsForSourceProteinIds returns reactions for a collection of source input compound ids

Description

getReactionsForSourceProteinIds returns reactions for a collection of source input compound ids

Usage

getReactionsForSourceProteinIds(
  db = RaMP(),
  proteinIds,
  onlyHumanMets = F,
  humanProtein = F,
  includeTransportRxns = F,
  rxnDirs = c("UN")
)

Arguments

db	RaMP object
proteinIds	list uniprot accessions with prefix (uniprot:)
onlyHumanMets	boolean to only return pathways containing only human metabolites (ChEBI ontology) (dev in progress)
humanProtein	boolean to only control pathways catalyzed by a human proteins (having human Uniprot) (dev in progress)
includeTransportRxns	if TRUE, returns metabolic and transport reactions

Value

returns a dataframe of reaction information for each ramp compound id

ncats/RaMP-DB documentation built on April 28, 2024, 3:28 a.m.