getReactionsForRaMPCompoundIds: getReactionsForRaMPCompoundIds returns reactions for a...

In ncats/RaMP-DB: RaMP (Relational Database of Metabolomic Pathways)

getReactionsForRaMPCompoundIds returns reactions for a collection of RaMP compound ids

Description

getReactionsForRaMPCompoundIds returns reactions for a collection of RaMP compound ids

Usage

getReactionsForRaMPCompoundIds(
  db = RaMP(),
  rampCompoundIds,
  onlyHumanMets = F,
  humanProtein = F,
  includeTransportRxns = F,
  rxnDirs = c("UN")
)

Arguments

db	RaMP object
rampCompoundIds	list of ramp compound ids
onlyHumanMets	boolean to only return pathways containing only human metabolites (ChEBI ontology) (dev in progress)
humanProtein	boolean to only control pathways catalyzed by a human proteins (having human Uniprot) (dev in progress)
includeTransportRxns	if TRUE, returns metabolic and transport reactions

Value

returns a dataframe of reaction information for each ramp compound id

ncats/RaMP-DB documentation built on June 1, 2024, 9:34 p.m.