getReactionsForRaMPGeneIds: getReactionsForRaMPGeneIds returns reactions for a collection...

In ncats/RaMP-DB: RaMP (Relational Database of Metabolomic Pathways)

getReactionsForRaMPGeneIds returns reactions for a collection of ramp compound ids

Description

getReactionsForRaMPGeneIds returns reactions for a collection of ramp compound ids

Usage

getReactionsForRaMPGeneIds(
  db = RaMP(),
  rampGeneIds,
  onlyHumanMets = F,
  humanProtein = F,
  includeTransportRxns = F,
  rxnDirs = c("UN")
)

Arguments

rampGeneIds	list of ramp compound ids
onlyHumanMets	boolean to only return pathways containing only human metabolites (ChEBI ontology) (dev in progress)
humanProtein	boolean to only control pathways catalyzed by a human proteins (having human Uniprot) (dev in progress)
includeTransportRxns	if TRUE, returns metabolic and transport reactions

Value

returns a dataframe of reaction information for each ramp compound id

ncats/RaMP-DB documentation built on June 1, 2024, 9:34 p.m.