Description Usage Arguments Value

View source: R/processNewRamp.R

Compute overlaping matrix based on given list return by findAnalyteHasPathway()

1 | ```
compute_overlap_matrix(pathwayid, pathwaysWithAnalytes, overlapmethod)
``` |

`pathwayid` |
a vector that has all ramp pathway id in the pathwaysWithAnalytes |

`pathwaysWithAnalytes` |
a list that has pathways ramp Id as name, analytes (ramp compound id only or gene id only or both) as content. Return by findAnalyteHasPathway |

`overlapmethod` |
must be in c('balanced','weighted') to determine which way to calculate this matrix |

the overlap matrix that has the overlap

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