compute_overlap_matrix: Compute overlaping matrix based on given list return by...

Description Usage Arguments Value

View source: R/processNewRamp.R

Description

Compute overlaping matrix based on given list return by findAnalyteHasPathway()

Usage

1
compute_overlap_matrix(pathwayid, pathwaysWithAnalytes, overlapmethod)

Arguments

pathwayid

a vector that has all ramp pathway id in the pathwaysWithAnalytes

pathwaysWithAnalytes

a list that has pathways ramp Id as name, analytes (ramp compound id only or gene id only or both) as content. Return by findAnalyteHasPathway

overlapmethod

must be in c('balanced','weighted') to determine which way to calculate this matrix

Value

the overlap matrix that has the overlap


ncats/RaMP-DB documentation built on Nov. 21, 2020, 7:41 p.m.