compute_overlap_matrix: Compute overlaping matrix based on given list return by...

View source: R/processNewRamp.R

compute_overlap_matrixR Documentation

Compute overlaping matrix based on given list return by findAnalyteHasPathway()

Description

Compute overlaping matrix based on given list return by findAnalyteHasPathway()

Usage

compute_overlap_matrix(pathwayid, pathwaysWithAnalytes, overlapmethod)

Arguments

pathwayid

a vector that has all ramp pathway id in the pathwaysWithAnalytes

pathwaysWithAnalytes

a list that has pathways ramp Id as name, analytes (ramp compound id only or gene id only or both) as content. Return by findAnalyteHasPathway

overlapmethod

must be in c('balanced','weighted') to determine which way to calculate this matrix

Value

the overlap matrix that has the overlap


ncats/RaMP-DB documentation built on May 6, 2022, 1:35 a.m.