API for pcahan1/CellNet
Assess and improve cell fate engineering with network biology
| Global functions | |
|---|---|
| GEP_makeMean | Man page |
| Norm_cleanExp | Man page |
| Norm_cleanPropRaw | Man page |
| Norm_loadAnnotation | Man page |
| Norm_preNormRaw | Man page |
| Norm_quantNorm | Man page |
| cleanup | Man page Source code |
| cn_HmClass | Man page |
| cn_HmClass_disease | Man page |
| cn_HmVars | Man page |
| cn_MakeTLs | Man page Source code |
| cn_addAUPRs | Man page |
| cn_apply | Man page |
| cn_assessGRN | Man page |
| cn_barplot_grnSing | Man page |
| cn_barplot_grnSing_base | Man page |
| cn_calcPRs | Man page |
| cn_clPerf | Man page |
| cn_classAssess | Man page |
| cn_class_perf_hm_ordered | Man page Source code |
| cn_classify | Man page |
| cn_clr | Man page |
| cn_compileGRNassessments | Man page |
| cn_computeAUCPR | Man page |
| cn_convertPR | Man page |
| cn_correctZmat | Man page |
| cn_eval | Man page |
| cn_extractRegsDF | Man page |
| cn_extractSubNets | Man page |
| cn_extract_SN_DF | Man page |
| cn_findSensAt | Man page |
| cn_findSpecGenes | Man page |
| cn_getRawGRN | Man page |
| cn_get_targets | Man page Source code |
| cn_get_targets_of | Man page Source code |
| cn_makeClassifier | Man page |
| cn_makeRFs | Man page |
| cn_makeSGs | Man page |
| cn_makeTFtable | Man page |
| cn_make_grn | Man page |
| cn_make_processor | Man page |
| cn_make_tVals | Man page |
| cn_make_tVals_predict | Man page |
| cn_netScores | Man page |
| cn_nis | Man page |
| cn_nis_all | Man page |
| cn_normalizeScores | Man page |
| cn_outputRes | Man page |
| cn_rawScore | Man page |
| cn_rectArea | Man page |
| cn_remake_processor | Man page |
| cn_s3_fetchFastq | Man page |
| cn_salmon | Man page |
| cn_sampR_to_pattern | Man page |
| cn_score | Man page |
| cn_setup | Man page |
| cn_specGRNs | Man page |
| cn_specGenesAll | Man page |
| cn_splitMakeAssess | Man page |
| cn_summ_AUPRs | Man page |
| cn_testPattern | Man page Source code |
| cn_tfScore | Man page |
| cn_trainNorm | Man page |
| cn_writeReadme | Man page |
| delete_par | Man page |
| downSampleW | Man page |
| expr_readSampTab | Man page |
| expr_reorder | Man page |
| fastq_readLength | Man page |
| fastq_trim | Man page |
| feature_count_par | Man page |
| fetchAndConvert | Man page |
| fetchIndexHandler | Man page |
| fetch_salmon_indices | Man page |
| find_tfs | Man page |
| gene_expr_sum | Man page |
| geo_fixNames | Man page |
| get_grn_scores | Man page |
| grn_corr_round | Man page |
| grn_zscores | Man page |
| hisat_QC_align | Man page |
| hisat_QC_aligns | Man page |
| hisat_findIndices | Man page |
| hsTFs | Man page |
| htseqCount | Man page |
| ig_tabToIgraph | Man page |
| mat_zscores | Man page |
| minDif | Man page |
| mmTFs | Man page |
| mp_rainbowPlot | Man page |
| multiplot | Man page Source code |
| ordered_class_perf_hm | Man page Source code |
| pdf_classification_hm | Man page |
| pdf_grn_status | Man page |
| pdf_grn_status_by_CT | Man page |
| pdf_grn_status_by_dlevel | Man page |
| pdf_nis_plots | Man page |
| plot_class_PRs | Man page |
| plot_nis | Man page |
| pool_auPRs | Man page |
| processSRA | Man page |
| qcAndSalmon | Man page |
| qc_analysis | Man page |
| randomize | Man page Source code |
| s3_get | Man page |
| s3_listDir | Man page |
| s3_put | Man page |
| salmon_load_tranEst | Man page |
| salmon_par | Man page |
| samp_for_class | Man page |
| sample_profiles_grn | Man page |
| sra_breakTable | Man page |
| sra_delete | Man page |
| sra_fetch | Man page |
| sra_parse | Man page |
| subSamp_for_class | Man page |
| subsamp_fastqs | Man page |
| trans_dNorm | Man page |
| trans_eShift | Man page |
| trans_fetch_index | Man page |
| trans_rnaseq | Man page |
| utils_count_comments | Man page |
| utils_loadObject | Man page |
| utils_log | Man page |
| utils_myDate | Man page |
| utils_myDist | Man page |
| utils_strip_fname | Man page |
| utils_stripwhite | Man page |
| utils_tarcompress_dir | Man page |
| utils_unpack | Man page |
| weighted_down | Man page |
