reconstructGRN: reconstruct GRN ala CLR
In pcahan1/epoch: Dynamic GRN reconstruction from single cell RNA-Seq data
Description
Usage
Arguments
Value
Description
reconstruct GRN ala CLR uses minet
Usage
1
reconstructGRN(expDat, tfs, dgenes = NULL, method = "pearson", zThresh = 2)
Arguments
expDat
unsmoothed expression matrix
tfs
vector of transcription factor names
dgenes
dynamic genes, found using findDynGenes
method
either 'pearson' or 'MI' to be used in CLR
zThresh
zscore threshold default 2
Value
data frame of TF TG zscore corr
pcahan1/epoch documentation built on Feb. 14, 2022, 1:57 a.m.
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Description Usage Arguments Value
Description
reconstruct GRN ala CLR uses minet
Usage
1 | reconstructGRN(expDat, tfs, dgenes = NULL, method = "pearson", zThresh = 2)
|
Arguments
expDat |
unsmoothed expression matrix |
tfs |
vector of transcription factor names |
dgenes |
dynamic genes, found using findDynGenes |
method |
either 'pearson' or 'MI' to be used in CLR |
zThresh |
zscore threshold default 2 |
Value
data frame of TF TG zscore corr
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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