reconstructGRN_GENIE3: reconstruct GRN ala GENIE3
In pcahan1/epoch: Dynamic GRN reconstruction from single cell RNA-Seq data
Description
Usage
Arguments
Value
Description
reconstruct GRN ala GENIE3 using GENIE3
Usage
1
reconstructGRN_GENIE3(expDat, tfs, dgenes = NULL, weightThresh = 0)
Arguments
expDat
unsmoothed expression matrix
tfs
vector of transcription factor names
dgenes
dynamic genes, found using findDynGenes
weightThresh
threshold to consider call positive default 0
Value
data frame of TF TG zscore corr
pcahan1/epoch documentation built on Feb. 14, 2022, 1:57 a.m.
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Description Usage Arguments Value
Description
reconstruct GRN ala GENIE3 using GENIE3
Usage
1 | reconstructGRN_GENIE3(expDat, tfs, dgenes = NULL, weightThresh = 0)
|
Arguments
expDat |
unsmoothed expression matrix |
tfs |
vector of transcription factor names |
dgenes |
dynamic genes, found using findDynGenes |
weightThresh |
threshold to consider call positive default 0 |
Value
data frame of TF TG zscore corr
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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