static_shortest_path: Function to return shortest path from 1 TF to 1 TG in a...

In pcahan1/epoch: Dynamic GRN reconstruction from single cell RNA-Seq data

Description

Function to return shortest path from 1 TF to 1 TG in a static network

Usage

static_shortest_path(
  grnDF,
  from,
  to,
  weight_column = "weighted_score",
  compare_to_average = FALSE
)

Arguments

grnDF	a static network dataframe
from	the starting TF
to	the end TF
weight_column	column name in grnDF with edge weights that will be converted to distances
compare_to_average	if TRUE will compute normalized against average path length

Value

shortest path, distance, normalized distance, and action

pcahan1/epoch documentation built on Feb. 14, 2022, 1:57 a.m.