tfnet_pagerank: Function to compute page rank of TF-only networks
In pcahan1/epoch: Dynamic GRN reconstruction from single cell RNA-Seq data
Description
Usage
Arguments
Value
Description
Function to compute page rank of TF-only networks
Usage
1
tfnet_pagerank(dynnet, tfs, weight_column = "zscore", directed_graph = FALSE)
Arguments
dynnet
result of dynamic GRN reconstruction
tfs
TFs
weight_column
name of column in dynnet to weight edges
directed_graph
if GRN is directed or not
Value
list of dataframes of active TFs in each epoch and transition, ranked by page rank
pcahan1/epoch documentation built on Feb. 14, 2022, 1:57 a.m.
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Description Usage Arguments Value
Description
Function to compute page rank of TF-only networks
Usage
1 | tfnet_pagerank(dynnet, tfs, weight_column = "zscore", directed_graph = FALSE)
|
Arguments
dynnet |
result of dynamic GRN reconstruction |
tfs |
TFs |
weight_column |
name of column in dynnet to weight edges |
directed_graph |
if GRN is directed or not |
Value
list of dataframes of active TFs in each epoch and transition, ranked by page rank
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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