meffil.add.chip: Add a new chip for analysis.

In perishky/meffil: Efficient algorithms for DNA methylation

Add a new chip for analysis.

Description

Add a new chip for analysis.

Usage

meffil.add.chip(name, manifest)

Arguments

name	Name of the new chip.
manifest	A data frame obtained by loading the Illumina manifest into R.

Value

Assuming that manifest contains a satisfactory set of columns, a new feature set and a new chip is made available. Thus, name will be added to the vectors returned by meffil.list.featuresets() and meffil.list.chips().

The manifest must contain the following columns:

• "IlmnID"character

• "Name"character

• "AddressA_ID"character

• "AddressB_ID"character

• "Infinium_Design_Type"values "I","II" or ""

• "CHR"values "0"-"22", "M", "X" or "Y"

• "MAPINFO"integer

• "AlleleA_ProbeSeq"character

• UCSC_RefGene_Namecharacter

• UCSC_RefGene_Accessioncharacter

• UCSC_RefGene_Groupcharacter

• "UCSC_CpG_Islands_Name"character

• "Relation_to_UCSC_CpG_Island"character

• "snp.exclude"logical

perishky/meffil documentation built on March 20, 2024, 1:56 a.m.