meffil.add.chip: Add a new chip for analysis.

View source: R/manifest.r

meffil.add.chipR Documentation

Add a new chip for analysis.

Description

Add a new chip for analysis.

Usage

meffil.add.chip(name, manifest)

Arguments

name

Name of the new chip.

manifest

A data frame obtained by loading the Illumina manifest into R.

Value

Assuming that manifest contains a satisfactory set of columns, a new feature set and a new chip is made available. Thus, name will be added to the vectors returned by meffil.list.featuresets() and meffil.list.chips().

The manifest must contain the following columns:

  • "IlmnID"character

  • "Name"character

  • "AddressA_ID"character

  • "AddressB_ID"character

  • "Infinium_Design_Type"values "I","II" or ""

  • "CHR"values "0"-"22", "M", "X" or "Y"

  • "MAPINFO"integer

  • "AlleleA_ProbeSeq"character

  • UCSC_RefGene_Namecharacter

  • UCSC_RefGene_Accessioncharacter

  • UCSC_RefGene_Groupcharacter

  • "UCSC_CpG_Islands_Name"character

  • "Relation_to_UCSC_CpG_Island"character

  • "snp.exclude"logical


perishky/meffil documentation built on June 9, 2024, 5:59 p.m.