meffil.collapse.dups: Collapse duplicate probes
In perishky/meffil: Efficient algorithms for DNA methylation
meffil.collapse.dups R Documentation
Collapse duplicate probes
Description
Collapse duplicated probes by replacing them with a summary.
Usage
meffil.collapse.dups(beta, dup.fun = function(x) median(x, na.rm = T))
Arguments
beta
Methylation matrix returned by
meffil.normalize.samples().
dup.fun
Function to collapse duplicate probes
(Default: median).
Value
The input matrix with duplicated probes
(i.e. row names identical after stripping everything
after the "_" character) replaced by summaries defined by
dup.fun.
perishky/meffil documentation built on March 20, 2024, 1:56 a.m.
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| meffil.collapse.dups | R Documentation |
Collapse duplicate probes
Description
Collapse duplicated probes by replacing them with a summary.
Usage
meffil.collapse.dups(beta, dup.fun = function(x) median(x, na.rm = T))
Arguments
beta |
Methylation matrix returned by
|
dup.fun |
Function to collapse duplicate probes (Default: median). |
Value
The input matrix with duplicated probes
(i.e. row names identical after stripping everything
after the "_" character) replaced by summaries defined by
dup.fun.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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