meffil.collapse.dups: Collapse duplicate probes

View source: R/dups.r

meffil.collapse.dupsR Documentation

Collapse duplicate probes

Description

Collapse duplicated probes by replacing them with a summary.

Usage

meffil.collapse.dups(beta, dup.fun = function(x) median(x, na.rm = T))

Arguments

beta

Methylation matrix returned by meffil.normalize.samples().

dup.fun

Function to collapse duplicate probes (Default: median).

Value

The input matrix with duplicated probes (i.e. row names identical after stripping everything after the "_" character) replaced by summaries defined by dup.fun.


perishky/meffil documentation built on June 9, 2024, 5:59 p.m.