meffil.ewas.bedgraph: Save EWAS effect estimates to bedgraph file

In perishky/meffil: Efficient algorithms for DNA methylation

Save EWAS effect estimates to bedgraph file

Description

Saves EWAS effect estimates to a bedgraph file for viewing on a genome browser. More file format details can be found here: https://genome.ucsc.edu/goldenPath/help/bedgraph.html

Usage

meffil.ewas.bedgraph(
  ewas.object,
  filename,
  analysis,
  name,
  description,
  header
)

Arguments

ewas.object	Object returned by meffil.ewas().
filename	Filename for output, typically with a 'bed' extension.
analysis	The particular EWAS analysis from which to obtain summary statistics. This should be one of names(ewas.object$analyses).
name	Text name to be included in the bedgraph header.
description	Text description to be included in the bedgraph header.
header	Bedgraph header. The default header uses the name and description provided.

perishky/meffil documentation built on June 9, 2024, 5:59 p.m.