meffil.gds.detection.pvalues: Retrieve detection p-values from GDS file

In perishky/meffil: Efficient algorithms for DNA methylation

Retrieve detection p-values from GDS file

Description

Retrieve detection p-values from GDS file

Usage

meffil.gds.detection.pvalues(gds.filename, sites = NULL, samples = NULL)

Arguments

gds.filename	Name of GDS file generated by meffil.save.detection.pvalues().
sites	Names of CpG sites to load, if NULL then load all (Default: NULL).
samples	Names of samples to load, if NULL then load all (Default: NULL).

Value

Matrix of methylation levels with rows corresponding to CpG sites and columns to samples. Rows restricted sites if not NULL, and columns restricted to samples if not NULL.

perishky/meffil documentation built on March 20, 2024, 1:56 a.m.