meffil.list.cell.type.references: List of available cell type references

View source: R/cell-type-references.r

meffil.list.cell.type.referencesR Documentation

List of available cell type references

Description

List of available cell type references

Usage

meffil.list.cell.type.references()

Details

Names and description of available references:

  • "andrews and bakulski cord blood" Derived from FlowSorted.CordBlood.450k

  • "blood gse167998" Adult blood reference of Salas et al. Nat Comms 2022

  • "blood gse35069" Adult blood reference of Reinius et al. PLoS One 2012

  • "blood gse35069 chen" Adult blood reference of Reinius et al. PLoS One 2012 restricted to CpG sites of Table E2 in Chen et al. J Allergy Clin Immunol 2017

  • "blood gse35069 complete" Adult blood reference of Reinius et al. PLoS One 2012 with neutrophils and eosinophils

  • "blood idoloptimized" Derived from FlowSorted.Blood.450k

  • "blood idoloptimized epic" Derived from FlowSorted.Blood.EPIC

  • "combined cord blood" Derived from FlowSorted.CordBloodCombined.450k

  • "cord blood gse68456" Cord blood reference of Goede et al. Clin Epigenetics 2015

  • "gervin and lyle cord blood" Cord blood reference of Gervin et al. Epigenetics 2016

  • "guintivano dlpfc" Derived from FlowSorted.DLPFC.450k

  • "saliva gse48472" Saliva reference composed of buccal cell data from Slieker et al. Epigenetics Chromatin 2013 and (blood) immune cell data from Reinius et al. PLoS One 2012

Examples

## obtain a list of references
references <- meffil.list.cell.type.references()
## show descriptions for each
comment(references)


perishky/meffil documentation built on June 9, 2024, 5:59 p.m.