meffil.list.cell.type.references: List of available cell type references

In perishky/meffil: Efficient algorithms for DNA methylation

List of available cell type references

Description

List of available cell type references

Usage

meffil.list.cell.type.references()

Details

Names and description of available references:

• "andrews and bakulski cord blood" Derived from FlowSorted.CordBlood.450k

• "blood gse167998" Adult blood reference of Salas et al. Nat Comms 2022

• "blood gse35069" Adult blood reference of Reinius et al. PLoS One 2012

• "blood gse35069 chen" Adult blood reference of Reinius et al. PLoS One 2012 restricted to CpG sites of Table E2 in Chen et al. J Allergy Clin Immunol 2017

• "blood gse35069 complete" Adult blood reference of Reinius et al. PLoS One 2012 with neutrophils and eosinophils

• "blood idoloptimized" Derived from FlowSorted.Blood.450k

• "blood idoloptimized epic" Derived from FlowSorted.Blood.EPIC

• "combined cord blood" Derived from FlowSorted.CordBloodCombined.450k

• "cord blood gse68456" Cord blood reference of Goede et al. Clin Epigenetics 2015

• "gervin and lyle cord blood" Cord blood reference of Gervin et al. Epigenetics 2016

• "guintivano dlpfc" Derived from FlowSorted.DLPFC.450k

• "saliva gse48472" Saliva reference composed of buccal cell data from Slieker et al. Epigenetics Chromatin 2013 and (blood) immune cell data from Reinius et al. PLoS One 2012

Examples

## obtain a list of references
references <- meffil.list.cell.type.references()
## show descriptions for each
comment(references)

perishky/meffil documentation built on March 20, 2024, 1:56 a.m.