meffil.ewas.parameters: Specify parameters for QC

In perishky/meffil: Efficient algorithms for DNA methylation

Specify parameters for QC

Description

Specify parameters for QC

Usage

meffil.ewas.parameters(
  sig.threshold = NA,
  max.plots = 10,
  model = "none",
  qq.inflation.method = "median"
)

Arguments

sig.threshold	P-value threshold for significance (Default: NA). If NA, then threshold used will be 0.05 divided by the number of tests/probes.
max.plots	Maximum number of plots to generate (Default: 10).
model	Model to use for selecting associations: "none" (no covariates), "all" (all covariates), "isva" (independent surrogate variables), and "sva" (surrogate variables) (Default: "none").
qq.inflation.method	Method for calculating genomic inflation lambda. Valid values are "median", "regression" or "robust" (Default: "median").

Value

List of parameter values

perishky/meffil documentation built on June 9, 2024, 5:59 p.m.