meffil.gds.methylation: Retrieve methylation levels from GDS file
In perishky/meffil: Efficient algorithms for DNA methylation
meffil.gds.methylation R Documentation
Retrieve methylation levels from GDS file
Description
Retrieve methylation levels from GDS file
Usage
meffil.gds.methylation(gds.filename, sites = NULL, samples = NULL)
Arguments
gds.filename
Name of GDS file generated by meffil.normalize.samples().
sites
Names of CpG sites to load, if NULL then load all (Default: NULL).
samples
Names of samples to load, if NULL then load all (Default: NULL).
Value
Matrix of methylation levels with rows corresponding to CpG sites
and columns to samples. Rows restricted sites if not NULL,
and columns restricted to samples if not NULL.
perishky/meffil documentation built on March 20, 2024, 1:56 a.m.
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| meffil.gds.methylation | R Documentation |
Retrieve methylation levels from GDS file
Description
Retrieve methylation levels from GDS file
Usage
meffil.gds.methylation(gds.filename, sites = NULL, samples = NULL)
Arguments
gds.filename |
Name of GDS file generated by |
sites |
Names of CpG sites to load, if |
samples |
Names of samples to load, if |
Value
Matrix of methylation levels with rows corresponding to CpG sites
and columns to samples. Rows restricted sites if not NULL,
and columns restricted to samples if not NULL.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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