meffil.estimate.cell.counts.from.betas: Estimate cell counts for a methylation matrix from a...

View source: R/estimate-cell-counts.r

meffil.estimate.cell.counts.from.betasR Documentation

Estimate cell counts for a methylation matrix from a reference

Description

Estimate cell counts for a methylation matrix from a reference

Usage

meffil.estimate.cell.counts.from.betas(beta, cell.type.reference, verbose = F)

Arguments

beta

Matrix of methylation levels (rows = CpG sites, columns = subjects).

cell.type.reference

Character string name of the cell type reference to use for estimating cell counts. See meffil.list.cell.type.references() for a list of available references. New references can be created using meffil.add.cell.type.reference().

verbose

If TRUE, then status messages are printed during execution (Default: FALSE).

Value

A matrix of cell count estimates.

Results should be nearly identical to estimateCellCounts().


perishky/meffil documentation built on March 20, 2024, 1:56 a.m.