meffil.estimate.cell.counts.from.betas: Estimate cell counts for a methylation matrix from a...

In perishky/meffil: Efficient algorithms for DNA methylation

Estimate cell counts for a methylation matrix from a reference

Description

Estimate cell counts for a methylation matrix from a reference

Usage

meffil.estimate.cell.counts.from.betas(beta, cell.type.reference, verbose = F)

Arguments

beta	Matrix of methylation levels (rows = CpG sites, columns = subjects).
cell.type.reference	Character string name of the cell type reference to use for estimating cell counts. See meffil.list.cell.type.references() for a list of available references. New references can be created using meffil.add.cell.type.reference().
verbose	If TRUE, then status messages are printed during execution (Default: FALSE).

Value

A matrix of cell count estimates.

Results should be nearly identical to estimateCellCounts().

perishky/meffil documentation built on June 9, 2024, 5:59 p.m.