SequencingSummaryBarcodeMerge: merge sequencing summary and barcode summary files
In sagrudd/nanopoRe: Accessory Methods for the Analysis of Oxford Nanopore Technologies DNA Sequence Data
Description
Usage
Arguments
Value
Examples
View source: R/SequencingSummaryBarcodes.R
Description
This method is used by the BasicQC tutorial to merge the common sequence
identifiers shared between sequencing_summary and barcode_summary
Usage
1
SequencingSummaryBarcodeMerge(seqsum = NA, barcodeFile = NULL)
Arguments
seqsum
is the data.frame object as prepared by importSequencingSummary
barcodeFile
pointer to a barcode file as produced by Guppy
Value
a data.frame with barcode information
Examples
1
2
3
4
5
6
seqsumFile <- system.file(
'extdata', 'sequencing_summary.txt.bz2', package = 'nanopoRe')
importSequencingSummary(seqsumFile)
barcodeFile <- system.file(
'extdata', 'barcoding_summary.txt.bz2', package = 'nanopoRe')
SequencingSummaryBarcodeMerge(barcodeFile=barcodeFile)
sagrudd/nanopoRe documentation built on June 7, 2020, 10:20 p.m.
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Description Usage Arguments Value Examples
View source: R/SequencingSummaryBarcodes.R
Description
This method is used by the BasicQC tutorial to merge the common sequence identifiers shared between sequencing_summary and barcode_summary
Usage
1 | SequencingSummaryBarcodeMerge(seqsum = NA, barcodeFile = NULL)
|
Arguments
seqsum |
is the data.frame object as prepared by importSequencingSummary |
barcodeFile |
pointer to a barcode file as produced by Guppy |
Value
a data.frame with barcode information
Examples
1 2 3 4 5 6 | seqsumFile <- system.file(
'extdata', 'sequencing_summary.txt.bz2', package = 'nanopoRe')
importSequencingSummary(seqsumFile)
barcodeFile <- system.file(
'extdata', 'barcoding_summary.txt.bz2', package = 'nanopoRe')
SequencingSummaryBarcodeMerge(barcodeFile=barcodeFile)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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