SequencingSummaryCumulativeBases: plot cumulative volumes of sequence bases

Description Usage Arguments Value Examples

View source: R/SequencingSummary.R

Description

plots a ggplot2 graph of accumulated sequenced bases against time for run and separates bases called from passed and failed sequence reads

Usage

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SequencingSummaryCumulativeBases(seqsum,
    sampleHours = NA,
    sampleIntervalMinutes = 60
)

Arguments

seqsum

is the data.frame object as prepared by importSequencingSummary

sampleHours

is the number of hours to plot data for

sampleIntervalMinutes

is the resolution to plot data at

Value

ggplot2 showing temporal performance

Examples

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init()
seqsumFile <- system.file("extdata",
    "sequencing_summary.txt.bz2", package = "nanopoRe")
seqsum <- importSequencingSummary(seqsumFile)
plot <- SequencingSummaryCumulativeBases(seqsum)

sagrudd/nanopoRe documentation built on June 7, 2020, 10:20 p.m.