SequencingSummaryPassGauge: prepare a gauge plot of sequencing_summary reads passing QC

Description Usage Arguments Value Examples

View source: R/SequencingSummary.R

Description

plots the basic eye-candy gauge plot of reads passing QC threshold

Usage

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Arguments

seqsum

is the data.frame object as prepared by importSequencingSummary

Value

ggplot2 gauge plot

Examples

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init()
seqsumFile <- system.file("extdata",
    "sequencing_summary.txt.bz2", package = "nanopoRe")
seqsum <- importSequencingSummary(seqsumFile)
plot <- SequencingSummaryPassGauge(seqsum)

sagrudd/nanopoRe documentation built on June 7, 2020, 10:20 p.m.