loadMethylationBamFile: prepares a data.frame of read mapping context for methylation...
In sagrudd/nanopoRe: Accessory Methods for the Analysis of Oxford Nanopore Technologies DNA Sequence Data
Description
Usage
Arguments
Value
Description
This method will parses the specified BAM file to extract CIGAR and other coordinates for
the purpose of selecting sequence bases that are base modified
Usage
1
loadMethylationBamFile(bamFile, chrId, force = FALSE)
Arguments
bamFile
is the bam file to parse
chrId
is the identifier for the chromosome to parse
force
is logical specifying whether the load should be forced (recalculated)
Value
data.frame
sagrudd/nanopoRe documentation built on June 7, 2020, 10:20 p.m.
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Description Usage Arguments Value
Description
This method will parses the specified BAM file to extract CIGAR and other coordinates for the purpose of selecting sequence bases that are base modified
Usage
1 | loadMethylationBamFile(bamFile, chrId, force = FALSE)
|
Arguments
bamFile |
is the bam file to parse |
chrId |
is the identifier for the chromosome to parse |
force |
is logical specifying whether the load should be forced (recalculated) |
Value
data.frame
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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